Module Details

The information contained in this module specification was correct at the time of publication but may be subject to change, either during the session because of unforeseen circumstances, or following review of the module at the end of the session. Queries about the module should be directed to the member of staff with responsibility for the module.
Title Software Techniques and Modelling
Code PHYS866
Coordinator Prof AFG Taktak
Physics
Afgt@liverpool.ac.uk
Year CATS Level Semester CATS Value
Session 2018-19 Level 7 FHEQ Whole Session 10

Aims

The aim is to give the students a detailed knowledge of various software techniques that are used in conjunction with the solution of biological problems. They will gain the basic knowledge through lectures and seminars. A further aim is to give the student experience of using a range of software to explore clinical scenarios. This will be carried out in practical sessions and the results discussed in groups


Learning Outcomes

Have a detailed knowledge of software that is used for modelling bioinformatics data.

Summarise and present results from complex bespoke software for clinical scenarioes in written form

The demonstration of  the use of software packages to solve a clinical problem as part of an oral presentation


Syllabus

Software techniques

·       Neural networks and their applications

·       Artificial intelligence and expert systems

·       Image processing software

·       Genetic algorithms

 

Modelling biological systems

·       Analysis of DNA, protein, biological diversity and molecular interaction data

·       Use of bioinformatics and systems biology databases

·       Data sources and data synthesis.

·       Monte-Carlo modelling


Teaching and Learning Strategies

Lectures - Lectures and seminars covering the content

Group-work - Group discussion to determine potential solutions to clinical problems

Laboratory Work - Computer based lab work using software packages


Teaching Schedule

  Lectures Seminars Tutorials Lab Practicals Fieldwork Placement Other TOTAL
Study Hours       10
Computer based lab work using software packages
  10
Lectures and seminars covering the content
10
Group discussion to determine potential solutions to clinical problems
30
Timetable (if known)              
Private Study 70
TOTAL HOURS 100

Assessment

EXAM Duration Timing
(Semester)
% of
final
mark
Resit/resubmission
opportunity
Penalty for late
submission
Notes
             
CONTINUOUS Duration Timing
(Semester)
% of
final
mark
Resit/resubmission
opportunity
Penalty for late
submission
Notes
Coursework  2000 words  May Semester 2  70  Yes  Standard UoL penalty applies  Modelling Applications Assignment 
Practical Assessment  20 minutes  June of Semester 2 given as 1   30  Yes  Standard UoL penalty applies  Software Development Presentation Notes (applying to all assessments) - none 

Recommended Texts

Reading lists are managed at readinglists.liverpool.ac.uk. Click here to access the reading lists for this module.
Explanation of Reading List: