Module Details

The information contained in this module specification was correct at the time of publication but may be subject to change, either during the session because of unforeseen circumstances, or following review of the module at the end of the session. Queries about the module should be directed to the member of staff with responsibility for the module.
Title BASIC BIOLOGY FOR NANOTECHNOLOGY
Code CHEM227
Coordinator Prof M Brust
Chemistry
M.Brust@liverpool.ac.uk
Year CATS Level Semester CATS Value
Session 2013-14 Level Two First Semester 15

Aims

The aim of this module is to provide students with basic knowledge in molecular and cell biology, in particular, aspects of relevance to Nanotechnology. The module is conceptually divided in two closely interrelated parts, which are taught in an alternating fashion:

·        Part 1: Basic Biomolecular Chemistry: to introduce the important classes of biomolecules (nucleic acids, proteins, lipids and carbohydrates) and some of their diverse roles in living organisms. In addition, an overview of the most important experimental methods of modern molecular biology is given.

·        Part 2: Biological Nanostructures and their Functions: based on the knowledge of function and structure of biomolecules gained in Part 1 the structural and functional organisation of biological nanostructures such as membranes and organelles is discussed. Particular emphasis is given to th e relation between function and complex organisation on the nanometre scale.


Learning Outcomes

By the end of the module, students should be able to:

  • relate the structures and conformations of nucleic acids, proteins (enzymes), polysaccharides and lipids to their function in a complex, nanostructured (biological) environment.
  • describe the machinery of protein biosynthesis and assess regulatory processes on various levels, i.e. transcription control, post transcriptional control etc..
  • critically assess the use of key experimental methods and interpret the results as applied to biological problems on the nanometre scale.
  • assess the role of molecular structure and nanoscale organisation for the function of biological membranes and membrane bound processes in different scenarios, i.e. signal transduction in nerve cells, respiratory processes in mitochondria, photosynthesis in chloroplast s and cell communication.
  • discuss the importance of nanoscale organisation of sub-cellular structures.
  • relate molecular scale conformation changes to nanoscale organisation and micro- and macroscopic motion caused by molecular motors in biological systems. 
  • predict membrane potentials from the application of the Nernst Donnan Equation
  • relate basic electrical and electrochemical processes to complex physiological phenomena.

Syllabus

Part 1: Basic Biomolecular Chemistry

·        DNA and RNA structure and replication

Regulation of gene activity

·        Protein biosynthesis

·        Proteinstructure and function (selected examples)

·        Polysaccharides in biological systems

Cell communication

·        Lipids in biological systems

·        Selected biomolecular methods (separation techniques, PCR, electrophoresis, blotting)

Part 2: Biological Nanostructures and their Function

  • Self-organisation phenomena in biological systems
  • Viruses
  • Cells, membranes and organelles
  • Neurons and synapses
  • Signal transduction in biological systems
  • Ion channels and pumps
  • Molecular motors (kinesin, actin-myosin, etc.)
  • Nanostructuration of Life
  • Physico-Chemical phenomena on the nanoscale (membrane potentials, signal transduction, catalysis, molecular motion and transport)

Teaching and Learning Strategies

This module consists of 30 x 50-minute lectures to be given in the first semester.  These lectures will be used to provide the background material necessary to succeed in this module. The lectures will be supported by six small group tutorials. In the tutorials students will have the opportunity to apply the knowledge that have gained from the lectures to problems of varying difficulty. Students will also be given two sets of assessed work, either essays or extended problems, which they will be expected to complete in their own time, which will cover the two interrelated parts of this module. Successful completion of these problem sets will require the application of both knowledge gained from lectures and from reading around the subject and problem solving skills gained in the tutorials. Students will be expected to spend approximately 10 hours on each set of problems and an additional six hours perweek in private study related to this module.


Teaching Schedule

  Lectures Seminars Tutorials Lab Practicals Fieldwork Placement Other TOTAL
Study Hours 30

  6

      36
Timetable (if known) 30 lectures
 
  6 tutorials
 
       
Private Study 114
TOTAL HOURS 150

Assessment

EXAM Duration Timing
(Semester)
% of
final
mark
Resit/resubmission
opportunity
Penalty for late
submission
Notes
Written Examination  3 hours  first  80  August resit opportunity for yr 2 students only. Yr 3 (and 4) resit at the next normal opportunity     
CONTINUOUS Duration Timing
(Semester)
% of
final
mark
Resit/resubmission
opportunity
Penalty for late
submission
Notes
Assessed work: essays or extended problems    first  20  None  Standard University Policy applies - see Department/School handbook for details.  This work is not marked anonymously  

Recommended Texts

  1. Trudy McKee, James R. McKee, BIOCHEMISTRY: THE MOLECULAR BASIS OF LIFE, 3rd Edition, McGraw-Hill, Boston, Burr Ridge, IL Dubuque, IA Madison, WI New York, San Francisco, St Louis, Bangkok, Bogota, Kuala Lumpur, Lisbon, London, Madrid, Mexico City, Milan, Montreal, New Dehli, Santiago, Seoul, Singapore, Sidney, Taipei, Toronto, ISBN: 0-07-112248-6, 2003.
  1. Christopher K. Mathews, K.E. van Holde and  Kenvin G. Ahern, BIOCHEMISTRY, 3rd Edition , Robin Heyden, San Francisco, Reading, Massachusetts, New York, Harlow, Don Mills, Ontario, Sydney, Madrid, Amsterdam,  ISBN: 0-8053-3066-6, 2000.
  1. Alberts, Bray, Hopkin, Johnson, Lewis, Raff, Roberts, Walter, Essential Cell Biology 2nd Edition, Garland Science, New York and London, ISBN: 0-81 53-3481-8, 2004.