Module Details

The information contained in this module specification was correct at the time of publication but may be subject to change, either during the session because of unforeseen circumstances, or following review of the module at the end of the session. Queries about the module should be directed to the member of staff with responsibility for the module.
Title SPECTROSCOPY
Code CHEM374
Coordinator Dr H Arnolds
Chemistry
Year CATS Level Semester CATS Value
Session 2008-09 M Level Second Semester 15

Aims

This is an advanced module to familiarise the student with modern spectroscopic and mass spectrometric techniques and their applications in materials characterisation. Emphasis is given to those techniques, which are currently most important to chemical research both in industry and academia. The students should be able to understand the basic physical principles of these techniques and to decide which combination of techniques is best employed to tackle a particular problem of materials/chemicals characterisation.  

The aims of the module are:

-         To explain main principles of Nuclear Magnetic Resonance Spectroscopy from the point of view of interactions of nuclear spins in solution and in the solid state.

-         To introduce a variety of modern NMR methods for the determination of chemical structure and intermolecular interactions in comp lex organic molecules, polymers and solids.

-         To introduce the concept of magnetic resonance imaging and its industrial and biomedical applications.

-         To explain main principles of Mass spectrometry, modern instrumentation and ionisation techniques.

-         To enable students to decide which techniques of mass spectrometry should be applied to a particular problem.

-         To enable students to interpret mass spectra of a range of different compound classes.

-         To present an overview, and in some selected cases, detailed knowledge on modern surface spectroscopic techniques.

- To enable students to chose from a repertoire of techniques in order to tackle a problem of surface characterisat ion.


Learning Outcomes

By the end of the module, students should be able to:

-         Discuss the behaviour of nuclear spins and their ensembles in external magnetic field;

-         Discuss main magnetic interactions influencing the appearance of NMR spectra;

-         Describe the structure of modern NMR spectrometers;

-         Explain the concepts of data acquisition and processing;

-         Show an understanding of chemical shift, magnetisation, rotating frame of reference, scalar coupling, basic pulse programming;

-         Explain the principles of determination of T1 and T2 relaxation times and calculate T1 and T2 from the NMR dat a;

-         Describe main one-dimensional experiments and interpret the spectra;

-         Explain the nuclear Overhauser effect and its use in analysis of complex organic molecules;

-         Explain main principles of two-dimensional experiments and interpret the 2D spectra recorded for both liquids and solids;

-         Explain the concept of coherence and coherence transfer;

-         Explain the differences in acquisition of solution and solid-state NMR spectra;

-         Explain the MAS, cross-polarisation and decoupling methods used for solids;

-         Describe experiments suitable for the analysis of int ernuclear connectivites, distances and mobility in organic and inorganic solids;

-         Understand the concept of magnetic resonance imaging and its industrial and biomedical applications.

-         Describe the function of modern mass spectrometers.

-         Explain all major ionisation techniques used in mass spectrometry.

-         Decide which ionisation technique should be applied to a particular problem.

-         Explain reactions occurring in mass spectrometers (rearrangements and fragmentations).

-         Interpret mass spectra.

-         Explain the role of mass spectrometry in proteomics research.

-         Explain the use of mass spectrometry in surface characterisation.

-         Explain surface vibrational spectroscopy (IR, RAMAN, SERS)

-         Explain the surface selection rule.

-         Understand XPS and interpret XPS spectra

-         Understand the basics of X-ray fluorescence and Auger Electron Spectroscopy.

-         Understand EDX and EELS and interpret spectra.

-         Critically compare different methods of surface spectroscopy.

-        Solve real research problems in chemistry by the application of Mass Spectrometry and surface spectros copic methods and correctly interpret the results.


Syllabus

NMR (16 lectures, Yaroslav Khimyak)

 

  1. Basics of NMR (1-6)

-         Spins in a magnetic field

-         Vector model of NMR

-         Quantum mechanical description

-         Experimental NMR: nuts and bolts

-         Fourier Transformation and data processing

-         Chemical Shift, Scalar coupling, Dipolar coupling

-         Relaxation (T1 and T2 measurements)

 

  1. High Resolution NMR Spectroscopy (7-11)

-&# 160;        Making the spins dance (decoupling, composite pulses)

-         NMR spectra of exchanging and reacting systems

-         Multiple resonance and one-dimensional pulse sequences

-         The nuclear Overhauser effect

-         Two-dimensional NMR and 2D experiments using coherence transfer (application for biomolecules and polymers)

 

  1. Solid-State NMR (12-14)

-         Magnetic interactions in solids (dipolar coupling, chemical shift anisotropy, quadrupolar coupling)

-         Main experimental techniques (magic-angle spinning, heteronuclear dec oupling, homonuclear decoupling, cross-polarisation)

-         Studies of quadrupolar nuclei (high-resolution experiments for half-integer quadrupolar nuclei)

-         Analysis of molecular motions in solids

 

  1. Magnetic resonance imaging (15-16)

-         Producing an image

-         Diffusion and flow

-         Chemical shift imaging

-         Biological use of imaging

-         Biomedical NMR

 

 

Mass Spectrometry and Surface Spectroscopies (16 lectures, Heike Arnolds)

 

 

1. Mass Spectrometry (7 lectures)

 

-         Instrumentation and Ionisation Methods (1 lecture)

-         ICP-MS (1 lecture)

-         Mass spectra of small to medium size molecules (1 lecture)

-         Mass spectra of macromolecules (1 lecture)

-         MS in proteomics research (2 lectures)

-         SIMS (1 lecture)

 

2. Surface Spectroscopies (9 lectures)

 

-         vibrational surface spectroscopies (IR, Raman, SERS) (3 lectures)

-         X-ray based surface spectroscopies (XPS, XRF, AugerES) (3 lectures)

-         Electron based surface spectroscopy (EDX, EELS) (3 lectures)

 

 


Teaching and Learning Strategies

This module consists of 32 lectures (50 minutes), six tutorials and two sample classes.  Students are expected to prepare the answers to tutorial problem questions before the tutorials, discuss them during the tutorials and submit answers to assignment problem questions after each tutorial.

Some students will take this module in Year 3 of their degree programme while others will take it in year 4 (consult year coordinator or programme documentation)


Teaching Schedule

  Lectures Seminars Tutorials Lab Practicals Fieldwork Placement Other TOTAL
Study Hours 32

  6

      38
Timetable (if known)              
Private Study 112
TOTAL HOURS 150

Assessment

EXAM Duration Timing
(Semester)
% of
final
mark
Resit/resubmission
opportunity
Penalty for late
submission
Notes
Written Examination  3 hours  second semester  80  August resit opportunity for PGT students only. Year 3/4 students resit at the next normal opportun.     
CONTINUOUS Duration Timing
(Semester)
% of
final
mark
Resit/resubmission
opportunity
Penalty for late
submission
Notes
3 assignment question sets to be handed in following tutorials    wk 4,6,8,10,11,12 - Second Sem  20  Summer resit opportunity for PGT students only. Year 3/4 students resit at the next normal opport.  Standard University Policy applies - see Department/School handbook for details.  Each set will contribute 6.67% of the marks for the module. This work is not marked anonymously 

Recommended Texts

  1. M. H. Levitt, Spin dynamics.  Basics of nuclear magnetic resonance, John Wiley & Sons, 2002.
  2. M. J. Duer,  Solid-state NMR spectroscopy, Blackwell, 2004.
  3. R. K. Harris, Nuclear magnetic resonance spectroscopy.  A physicochemical view, Longman, 1997.
  4. J. W. Akitt and B. E. Mann, NMR and chemistry.  An introduction to modern spectroscopy, Stanley Thornes, 2000.
  5. Book on modern methods of mass spectrometry (to be decided)
  6. Attard and Barnes, Surfaces, Oxford Chemistry Primer, Oxford University Press 1998
  7. Banwell, McCash, Fundamentals of Molecular Spectroscopy, McGraw-Hill, 1994
  8. D. P. Woodruff and T. A. Delchar, Modern Techniques of Surface Science, Oxford University Press, 2001.